Cells were cultured in DMEM glutama supple mented with 10% FBS, N2, streptomycin penicillin and B27. The culture medium was renewed every 3 5 days. Cortical a on entered the micro channels and reached the hippocampi containing chamber in 4 5 days. The cortico hippocampal oriented network was main tained routinely up to 2 3 weeks in vitro. Oligomeric and fibrillar AB peptide preparations Oligomeric and fibrillar forms of AB1 42, were produced according to and controlled by electron microscopy. Briefly, lyophilized peptides were solubilized at 1 mM in 1, 1, 1, 3, 3, 3, he afluoro 2 propanol. After 30 min of incubation at RT, HFIP was evaporated overnight and peptides were dried. Then, AB peptide stock solution were obtained byresolubilizationet 5 mM in dimethylsulfo ide.
To obtain oligomers, AB stock solution was diluted at 100 uM in phenol free DMEM F12 medium, incubated 24 h at 4 C and centrifuged at 20 000 g before supernatant collection. To obtain fibrils, AB stock solution was diluted at 100 uM in HCl 10 mM and then incubated at 4 C for 24 h. Electron microscopy AB sample aliquots were allowed to adsorb onto carbon coated 200 mesh copper grids for 2 minutes before blotting off. Then, grids were incu bated for 45 seconds in uranyl acetate 2. 5% to algorithm, and a particle analyzer algorithm of ImageJ. The total area of a onal regions with circularity greater than 0. 9 was determined and normalized by the total a onal area, which was measured from the thresholded image. This ratio, termed fragmentation inde , is an indicator of the average a onal fragmentation level and is used in statistical comparisons.
Indices of 0. 005, 0. 083, and 0. 157 correspond to 5%, 50%, and 95% fragmenta tion, respectively. produce a negatively stained protein loaded grid. Images were recorded on a Zeiss 912 omega electron microscope. Treatments The following compounds were used AB1 42 peptide, AB25 35 peptide, control AB35 25 peptide, glutamate, MK 801,5 mM NAD, 50 uM z VAD fmk and 50 uM SP 600125. Oligomeric and fibrillar forms of AB1 42 were produced according to and controlled by electron microscopy. To ensure fluidic isolation between compartments, a hydrostatic pressure difference was generated by over pressurizing the non treated chamber as described in. Immunofluorescence detection Cultures were fi ed and immuno stained as described in.
Primary Dacomitinib antibodies included anti tubulin FITC, anti MAP2, anti Synaptophysin, anti Vglut1, anti synuclein, anti pTau Thr231. Species specific secondary antibodies were used. Images were acquired with an A io observer Z1 fitted with a cooled CCD camera and images were analyzed using ImageJ. Quantification of a onal fragmentation For a onal fragmentation analysis and quantification we used fluorescence microscopy, phase contrast, and picture analysis according to a previously described protocol.